Open source contributions

NeuroSeq

Create prototype of a MIDI-like GUI to edit and simulate neuron models

Funded Project

iSparrow

Build a prototype for a flexible bioacoustic platform on edge devices (raspberry pi zero in particular)

Funded Project

DACS Application

Application form for DACS applicants and analysis notebook

Funded Project

MONDEY

MONDEY (Milestones of Normal Development in Early Years) website

Schreiben nach der Briefkultur: E-Mails - Dynamiken der Normierung und Standardisierung

Web portal where donors can upload emails. These emails are then anonymized using the Python package anonymizer and placed in a database together with the raw data and metadata.

Funded Project

predicTCR

Web service for users to upload samples, process them, download results

Funded Project

AHEAD

Dashboards and user interfaces for a digital patient admission system

Funded Project

C++ Interface for HydroSHEDS data

Allow access to existing hydrologic datasets through a C++11 interface

Small Scale Project

SSC Spack repository

Packaging Software for the HPC package manager “Spack”

Small Scale Project

Misinformation in social networks

Extract textual content from images

Small Scale Project

Jupyter-based course material for a C++ framework

Based on the Jupyter kernel xeus-cling, C++ course materials are rewritten as Jupyter notebooks.

Small Scale Project

Modern CMake Buildsystem for HyperHDG library

Modernization of the build system to follow the latest best practices of CMake

Small Scale Project

Advice on math

Small Scale Project

Configurable C++ project template

Configurable template repository for starting new C++ projects

Open Source Contribution

Systems biology simulation

Extand a parameter fitting script into a user-friendly Python module

Small Scale Project

Neuroscience data processing and analysis

Deploying and improving analysis pipelines on HPC resources

AFWizard: Adaptive ground point filtering for aerial archaelogy

Python framework to facilitate complex ground point filtering workflows in archaeologic prospection

Corpus and argumentation

Open-source software to automatize annotation and database encoding of linguistic texts

Python bindings from C++ pybind11 example

A simple example of how to provide Python bindings from C++ using pybind11

Open Source Contribution

Systems biology parameter estimation GUI

Extend parameter fitting functionality and integrate into the existing GUI application

py4dgeo: Change detection 4D point cloud data

Library of algorithms for the spatio-temporal analysis of 3D point cloud data. Provides an extensible, open Python framework based on a high performance C++ core.

Github Action to install Mesa3D

A Github Action to install Mesa3D on windows CI runners

Open Source Contribution

Misinformation campaigns characteristics

Open-source software to analyze image and text content of social media posts

EasyDB GND norm data updater

Small Scale Project

VINK (Voice to ink)

Stand-alone installer for the OpenAI Whisper transcription tool

Small Scale Project

Email anonymization

Tool to parse email body from email text and retains only the anonymized salutation and first sentence

Small Scale Project

Dust polarization observations

Improve portability and quality of code and tooling

Jupyter widgets for JSON schemas

A widget generator for your Jupyter notebooks

Open Source Contribution

Visuomotor Serial Targeting Task (VSTT)

Open source software with graphical user interface for designing, running and analyzing visuomotor targeting experiments

Ribosome profiling

Enhance the quality, portability and maintainability of the ribosome profiling analysis tool rp-bp

Sphinx extension for large data

An extension to the Sphinx documentation system that ensures Git LFS is installed

Open Source Contribution

clang-format Python packaging

Open Source Contribution

Moralization in written texts

Interface to train language models for multi-label token classification

IWR Interactive visualization prototype

An interactive web presentation of the IWR and its members

Small Scale Project

Mobile phone localization project

Analyses raw mobile phone data and produces a mobility network between antennas

Small Scale Project

Configurable Python project template

Configurable template repository for starting new Python packages

Open Source Contribution

CircuitSeq

Web service for a DNA sequencing service

Funded Project

HeiData integration for Pooch

Small Scale Project

Jupyter notebooks as command line applications

Turn Jupyter notebooks into command line applications

Open Source Contribution

FakeMPI

A sequential MPI stub for compiling MPI-parallel applications in sequential contexts

Open Source Contribution

EasyDB Zotero integration plugin

Small Scale Project

Color Detection Module in ammico

Small Scale Project

Interactive Network Visualization for Art Exhibition

Interactive network visualization to be used on a touch screen
device in the art exhibition “THE SOCIAL NETWORK. Die Gästebücher
des Kunstsammlers Franz Moufang”  in Kunstverein Heidelberg

Small Scale Project

Spatial Model Editor

Extend spatial modelling and simulation software from 2d to 3d

Funded Project

Packaging of Analysis Workflow for CNSR Core Facility

Small Scale Project

Refactoring of PoWR code

Modernisation of the Potsdam Wolf-Rayet Stellar Atmospheres code.

TEDIAS

Dashboards and user interfaces for a digital patient admission system

Funded Project

Github Action to install Doxygen

Open Source Contribution

Jupyter Kernel for Dockerfiles

Open Source Contribution

JAX Consultation

Consultation on JAX and software development best practices

SIMPA

Performance improvements for the toolkit for Simulation and Image Processing for Photonics and Acoustics (SIMPA).

Automatic generation of GUIs from click CLIs

Open Source Contribution

Hamming distance project

High performance implementation of a critical step in an analysis pipeline

Small Scale Project

Jove matrix performance project

Small Scale Project