Open Call project, 2022 Ribo-seq data analysis

The group have developed a cutting-edge Ribo-seq analysis tool rp-bp (and associated utility code pbiotools). The goal of this project is to work together with the applicant to enhance the quality, portability and maintainability of the code, as well as add new features.

• Refactored dependencies on outdated libraries
• Added a test suite
• Added continuous integration
  • Tests the code on linux and macos for different Python versions using

    GitHub actions

  • Provides code coverage reports and automatically formats pull requests
  • Deploys new release to

    PyPI

  • Builds and deploys the

    documentation

• Packaged rp-bp and pbiotools on

  PyPI

   and

  bioconda

  • Easy installation for users using conda
  • Also provides pre-built

    Docker containers

• Assisted interactive dashboard development